1. An insecticidal GroEL protein with chitin binding activity from Xenorhabdus nematophila; Mohan Chandra Joshi, Animesh Sharma, Sashi Kant, Ajanta Birah, Gorakh Prasad Gupta, Sharik R. Khan, Rakesh Bhatnagar, and Nirupama Banerjee; Journal of Biological Chemistry;  10.1074/jbc.M804416200, http://www.jbc.org/cgi/content/abstract/M804416200v1 [July 2008]
  2. Music from DNA string; YSR 2008 [May 2008]  
  3. Comparing the performance of various assemblers on a genome partially sequenced with 454 pyrosequencing; BREW 2008 [April 2008]
  4. Deriving meaningful rules from gene expression data for classification. [Accepted Feb 2008: JIFS]
  5. Computation of consensus hydrophobicity scales with self-organizing maps and fuzzy clustering along with applications to protein fold prediction; Nikhil R Pal, , Somitra Kumar Sanadhya, Animesh Sharma; Neural, Parallel & Scientific Computations; Vol 15, Page 75-90  [Feb 2007]
  6. Discovering biomarkers from gene expression data for predicting cancer subgroups using neural networks and relational fuzzy clustering; Nikhil R Pal  , Kripamoy Aguan  , Animesh Sharma  and Shun-ichi Amari; BMC Bioinformatics; doi:10.1186/1471-2105-8-5, http://www.biomedcentral.com/1471-2105/8/5/abstract  [Jan 2007]
  7. On identifying marker genes from gene expression data in a neural framework through online feature analysis; Nikhil R Pal, Animesh Sharma, Somitra Kumar Sanadhya, Karmeshu; International Journal of Intelligent Systems; Volume 21, Issue 4, Pages 453 - 467, http://www3.interscience.wiley.com/cgi-bin/abstract/112457017/  [Jan 2006]
  8. Clustering genes on the basis of composite regulatory patterns; Advanced post graduate diploma thesis; Jawaharlal Nehru University [May 2002].